PathLinker Cytoscape
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1. PathLinker Cytoscape
PathLinker Cytoscape
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PathLinker Cytoscape App User Manual
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PathLinker Cytoscape App User Manual
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Table of Contents
1. PathLinker Cytoscape
1.1. Description
1.2. Overview
1.3. Running the App
1.4. Inputs
1.4.1. Network
1.4.2. Sources/Targets
1.4.3. Algorithm
1.4.4. Edge weights
1.5. Outputs
1.6. Example
1.6.1. Load Network
1.6.2. Sources and Targets
1.6.3. Edge weight options
1.6.4. Results
1.6.5. Edge penalty
1.6.6. Include tied paths
1.7. Errors and Warnings
1.7.1. Sources or Targets not in network
1.7.2. Invalid input for parameters
1.7.3. Not all edges have weight
1.8. Cytoscape Automation / cyREST API
1.9. How to Cite PathLinker
1.10. Contact Information
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